| Version | - | |
| Date of preparation | 29 May 2008 21:48 | |
| Description | Select Alu repeats from REPBASE | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://www.ncbi.nlm.nih.gov/BLAST/blast_databases.html | |
| Sections | alunuc | Nucleic sequences |
| alupro | Protein sequences | |
| Version | 14.3 | |
| Date of preparation | 7 Feb 2010 00:11 | |
| Description | Multiply aligned ungapped segments corresponding to the most highly conserved regions of proteins | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://blocks.fhcrc.org/ | |
| Sections | blocks | full bank |
| Version | - | |
| Date of preparation | 13 Jul 2009 00:30 | |
| Description | Borrelia burgdorferi B31, complete genome | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://www.ncbi.nlm.nih.gov/genomes/chrom.cgi?db=G&gi=132 | |
| Sections | borrelia | full bank |
| Version | - | |
| Date of preparation | 11 Nov 2009 00:14 | |
| Description | Bacillus subtilis subsp. subtilis str. 168, complete genome | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://www.ncbi.nlm.nih.gov/genomes/chrom.cgi?db=G&gi=27 | |
| Sections | bsubtilis | full bank |
| Version | - | |
| Date of preparation | 24 Mar 2009 00:24 | |
| Description | Chlamydophila pneumoniae CWL029, complete genome | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://www.ncbi.nlm.nih.gov/genomes/chrom.cgi?db=G&gi=140 | |
| Sections | cpneumoniae | full bank |
| Version | - | |
| Date of preparation | 6 Feb 2010 01:08 | |
| Description | Secondary structure assignments database | |
| Origin (ftp) | ftp.cmbi.kun.nl | |
| Updates frequency | variable | |
| Other informations | http://swift.cmbi.ru.nl/gv/dssp/ | |
| Version | - | |
| Date of preparation | 7 Feb 2010 00:13 | |
| Description | Escherichia coli K12, complete genome | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://www.ncbi.nlm.nih.gov/genomes/chrom.cgi?db=G&gi=115 | |
| Sections | ecoli | full bank |
| Version | 102 | |
| Date of preparation | 7 Feb 2010 00:39 | |
| Description | EMBL Nucleotide Sequence Database | |
| Origin (ftp) | ftp.ebi.ac.uk | |
| Updates frequency | daily | |
| Other informations | http://www.ebi.ac.uk/embl/Documentation/ | |
| Sections | embl_new | updates |
| embl | release + updates | |
| Version | 2010027 | |
| Date of preparation | 20 Jan 2010 00:18 | |
| Description | Enzyme Nomenclature Database | |
| Origin (ftp) | ftp.expasy.ch | |
| Updates frequency | variable | |
| Other informations | http://www.expasy.ch/enzyme/ | |
| Sections | enzyme | full bank |
| Version | 100 | |
| Date of preparation | 22 Sep 2009 00:13 | |
| Description | Eukaryotic Promoter Database | |
| Origin (ftp) | ftp.epd.unil.ch | |
| Updates frequency | variable | |
| Other informations | http://www.epd.unil.ch/ | |
| Sections | epd | full bank |
| Version | - | |
| Date of preparation | 29 May 2008 22:48 | |
| Description | Fold classification based on Structure-Structure alignment of Proteins | |
| Origin (ftp) | ftp.ebi.ac.uk | |
| Updates frequency | variable | |
| Other informations | ftp://ftp.ebi.ac.uk/pub/databases/fssp/fssp.html | |
| Version | 175.0 | |
| Date of preparation | 7 Feb 2010 00:19 | |
| Description | NIH DNA sequence database | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | daily | |
| Other informations | http://www.ncbi.nlm.nih.gov/Genbank/GenbankOverview.html | |
| Sections | genbank_new | updates |
| genbank | release + updates | |
| gbbct | Bacterial | |
| gbenv | Environmental sampling | |
| gbest | EST (expressed sequence tag) | |
| gbgss | GSS (genome survey sequence) | |
| gbhtc | HTC (high throughput cDNA sequencing) | |
| gbhtg | HTG (high throughput genomic sequencing) | |
| gbinv | Invertebrate | |
| gbmam | Other mammalian | |
| gbpat | Patent | |
| gbphg | Phage | |
| gbpln | Plant (including fungi and algae) | |
| gbpri | Primate | |
| gbrod | Rodent | |
| gbsts | STS (sequence tagged site) | |
| gbsyn | Synthetic and chimeric | |
| gbtsa | Transcriptome shotgun assembly | |
| gbuna | Unannotated | |
| gbvrl | Viral | |
| gbvrt | Other vertebrate | |
| Version | - | |
| Date of preparation | 20 May 2009 00:26 | |
| Description | Mycoplasma genitalium G-37, complete genome | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://www.ncbi.nlm.nih.gov/genomes/chrom.cgi?db=G&gi=26 | |
| Sections | genitalium | full bank |
| Version | 175.0 | |
| Date of preparation | 7 Feb 2010 00:33 | |
| Description | Translations of Genbank | |
| Origin (ftp) | ftp.ncifcrf.gov | |
| Updates frequency | daily | |
| Other informations | ftp://ftp.ncifcrf.gov/pub/genpept/ | |
| Sections | genpept_new | updates |
| genpept | release + updates | |
| gpbct | Bacterial | |
| gpenv | Environmental sampling | |
| gpgss | GSS (genome survey sequence) | |
| gphtc | HTC (high throughput cDNA sequencing) | |
| gphtg | HTG (high throughput genomic sequencing) | |
| gpinv | Invertebrate | |
| gpmam | Other mammalian | |
| gppat | Patent | |
| gpphg | Phage | |
| gppln | Plant (including fungi and algae) | |
| gppri | Primate | |
| gprod | Rodent | |
| gpsts | STS (sequence tagged site) | |
| gpsyn | Synthetic and chimeric | |
| gpuna | Unannotated | |
| gpvrl | Viral | |
| gpvrt | Other vertebrate | |
| Version | - | |
| Date of preparation | 29 May 2008 21:57 | |
| Description | Helicobacter pylori 26695, complete genome | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://www.ncbi.nlm.nih.gov/genomes/chrom.cgi?db=G&gi=128 | |
| Sections | hpylori | full bank |
| Version | - | |
| Date of preparation | 7 Feb 2010 01:15 | |
| Description | Homology-derived secondary structure of proteins database | |
| Origin (ftp) | ftp.ebi.ac.uk | |
| Updates frequency | variable | |
| Other informations | ftp://ftp.ebi.ac.uk/pub/help/hssp.help | |
| Version | 201004-6 | |
| Date of preparation | 1 Feb 2010 00:12 | |
| Description | IMGT/LIGM-DB, ImMunoGeneTics sequence database | |
| Origin (ftp) | ftp.cines.fr | |
| Updates frequency | weekly | |
| Other informations | http://imgt.cines.fr/ | |
| Sections | imgt | full bank |
| Version | 24.0 | |
| Date of preparation | 22 Dec 2009 00:14 | |
| Description | Integrated Resource Of Protein Domains And Functional Sites | |
| Origin (ftp) | ftp.ebi.ac.uk | |
| Updates frequency | variable | |
| Other informations | http://www.ebi.ac.uk/interpro/ | |
| Version | - | |
| Date of preparation | 24 Jul 2009 15:39 | |
| Description | High-quality transcription factor binding profile database | |
| Origin (ftp) | - | |
| Updates frequency | unknown | |
| Other informations | http://jaspar.genereg.net/ | |
| Version | - | |
| Date of preparation | 20 Jul 2009 00:16 | |
| Description | Mycobacterium tuberculosis H37Rv, complete genome | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://www.ncbi.nlm.nih.gov/genomes/chrom.cgi?db=G&gi=135 | |
| Sections | mtuberculosis | full bank |
| Version | 02.7 | |
| Date of preparation | 7 Feb 2010 00:33 | |
| Description | NCBI non-redundant: (Genbank CDS translations+PDB+Swissprot+PIR) | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | monthly | |
| Other informations | http://www.ncbi.nlm.nih.gov/BLAST/blast_databases.html | |
| Sections | nrprot_new | monthly updates |
| nrprot | full bank | |
| Version | - | |
| Date of preparation | 4 Feb 2010 02:08 | |
| Description | Brookhaven Protein Databank | |
| Origin (ftp) | rsync.wwpdb.org | |
| Updates frequency | daily | |
| Other informations | http://www.rcsb.org/pdb/ | |
| Version | 23.0 | |
| Date of preparation | 23 Oct 2009 08:58 | |
| Description | Collection of Protein Domain Families | |
| Origin (ftp) | ftp.sanger.ac.uk | |
| Updates frequency | variable | |
| Other informations | http://www.sanger.ac.uk/Pfam/ | |
| Version | - | |
| Date of preparation | 18 Jun 2009 00:20 | |
| Description | Mycoplasma pneumoniae M129, complete genome | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://www.ncbi.nlm.nih.gov/genomes/chrom.cgi?db=G&gi=113 | |
| Sections | pneumoniae | full bank |
| Version | 40.0 | |
| Date of preparation | 23 Jan 2010 00:11 | |
| Description | Protein Motif Fingerprint Database | |
| Origin (ftp) | bioinf.man.ac.uk | |
| Updates frequency | variable | |
| Other informations | http://www.biochem.ucl.ac.uk/bsm/dbbrowser/PRINTS/ | |
| Sections | prints | full bank |
| Version | 20.59 | |
| Date of preparation | 20 Jan 2010 00:18 | |
| Description | Dictionary of Protein Sites and Patterns | |
| Origin (ftp) | ftp.expasy.ch | |
| Updates frequency | variable | |
| Other informations | http://www.expasy.ch/prosite/ | |
| Sections | prosite | full bank |
| Version | 10_16 | |
| Date of preparation | 16 Nov 2009 11:59 | |
| Description | Ribosomal Database Project II database | |
| Origin (ftp) | - | |
| Updates frequency | monthly | |
| Other informations | http://rdp.cme.msu.edu/ | |
| Version | 002 | |
| Date of preparation | 2 Feb 2010 00:12 | |
| Description | The Restriction Enzyme Database | |
| Origin (ftp) | ftp.neb.com | |
| Updates frequency | variable | |
| Other informations | http://rebase.neb.com/rebase/rebase.html | |
| Sections | rebase | full bank |
| Version | 39 | |
| Date of preparation | 7 Feb 2010 00:45 | |
| Description | NCBI Reference Sequence (RefSeq) Database | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | bimonthly | |
| Other informations | ftp://ftp.ncbi.nih.gov/refseq/README | |
| Sections | refseqn | Nucleic sequences |
| refseqp | Protein sequences | |
| Version | - | |
| Date of preparation | 29 May 2008 22:09 | |
| Description | UnFinished Microbial Genomes (UFMG) | |
| Origin (ftp) | ftp.tigr.org | |
| Updates frequency | variable | |
| Other informations | http://www.tigr.org/tigr-scripts/ufmg/ReleaseDate.cgi | |
| Sections | ufmg | full bank |
| Version | 15.13 | |
| Date of preparation | 7 Feb 2010 00:21 | |
| Description | Universal Protein Resource = SwissProt + TrEMBL + PIR | |
| Origin (ftp) | ftp.expasy.ch | |
| Updates frequency | weekly | |
| Other informations | http://www.expasy.org/sprot/ | |
| Sections | uniprot | full bank |
| uniprot_sprot | SwissProt part | |
| uniprot_trembl | Trembl part | |
| Version | - | |
| Date of preparation | 27 Jan 2009 12:48 | |
| Description | Clustered sets of sequences from UniProt Knowledgebase | |
| Origin (ftp) | ftp.expasy.ch | |
| Updates frequency | every | |
| Other informations | http://www.uniprot.org/help/uniref | |
| Version | - | |
| Date of preparation | 15 Jan 2010 00:39 | |
| Description | Vector subset of GenBank(R), NCBI | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://www.ncbi.nlm.nih.gov/BLAST/blast_databases.html | |
| Sections | vector | full bank |
| Version | - | |
| Date of preparation | 6 Feb 2010 07:36 | |
| Description | Genbank - Whole Genome Shotgun | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | unknown | |
| Other informations | http://www.ncbi.nlm.nih.gov/Genbank/wgs.html | |
| Sections | wgsnuc | Nucleic sequences |
| wgspro | Protein sequences | |
| Version | - | |
| Date of preparation | 15 Jan 2010 00:34 | |
| Description | Yeast chromosomes | |
| Origin (ftp) | genome-ftp.stanford.edu | |
| Updates frequency | variable | |
| Other informations | http://genome-www.stanford.edu/ | |
| Sections | yeast | full bank |
| Version | - | |
| Date of preparation | 31 Jan 2010 00:14 | |
| Description | Yersinia pestis unfinished genome | |
| Origin (ftp) | ftp.ncbi.nih.gov | |
| Updates frequency | variable | |
| Other informations | http://www.sanger.ac.uk/Projects/Y_pestis/ | |
| Sections | ypestis | full bank |