| description | ClonalFrame is a computer package for the inference of bacterial microevolution using multilocus sequence data |
| version | 1.1 |
| homepage | http://www2.warwick.ac.uk/fac/sci/statistics/staff/research/didelot/clonalframe/ |
| commands | ClonalFrame |
| manpages | |
| documentation | interfaces |
| description | Package for using multi-locus genotype data to investigate population structure. |
| version | 20070713 |
| homepage | http://lifesci.rutgers.edu/~heylab/HeylabSoftware.htm |
| commands | ima |
| manpages | |
| documentation | interfaces |
| description | Manipulation Environment for Genetic Analyses. |
| version | 2.4.5 |
| homepage | http://www.stat.washington.edu/thompson/Genepi/Loki.shtml |
| commands | check_het count.pl dist.pl freq.pl hist loki loki_ext.pl prep qavg sort_error.pl |
| manpages | loki |
| documentation | interfaces |
| description | Manipulation Environment for Genetic Analyses. |
| version | 4.3.1 |
| homepage | http://watson.hgen.pitt.edu/mega2.html |
| commands | mega2 l2a.py Rallegro.pl Rmerlin.pl Rmerlin_regress.pl Rsimwalk2.pl make_gen_table.pl make_hwe_table.pl mega2log2html.pl merlin2sw2.pl |
| manpages | mega2 |
| documentation |
http://watson.hgen.pitt.edu/docs/mega2_html/mega2.html |
interfaces |
| description | Tools for the statistical analysis of family-based association studies. |
| version | 3.5 |
| homepage | http://www.biostat.harvard.edu/~clange/default.htm |
| commands | pbat |
| manpages | |
| documentation | interfaces |
| description | Software for haplotype reconstruction, and recombination rate estimation from population data. |
| version | 2.1.1 |
| homepage | http://stephenslab.uchicago.edu/software.html |
| commands | phase |
| manpages | |
| documentation | interfaces |
| description | Linkage Disequilibrium Analyses for Quantitative and Discrete Traits. |
| version | 2.5.1 |
| homepage | http://www.sph.umich.edu/csg/abecasis/QTDT/ |
| commands | qtdt prelude finale |
| manpages | |
| documentation | interfaces |
| description | Package for using multi-locus genotype data to investigate population structure. |
| version | 2.2.2 |
| homepage | http://pritch.bsd.uchicago.edu/structure.html |
| commands | structure |
| manpages | |
| documentation | interfaces |