H/dist_vars.h

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#ifndef __VIENNA_RNA_PACKAGE_DIST_VARS_H__
#define __VIENNA_RNA_PACKAGE_DIST_VARS_H__

extern int   edit_backtrack;

extern char *aligned_line[4];

extern int  cost_matrix;

/*  Global type defs for Distance-Package */

typedef struct {
                 int  type;
                 int  weight;
                 int  father;
                 int  sons;
                 int  leftmostleaf;
               } Postorder_list;

typedef struct {
                 Postorder_list *postorder_list;
                 int            *keyroots;
               } Tree;

typedef struct {
                 int    type;
                 int    sign;
                 float  weight;
               } swString;
#endif

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