00001 #ifndef __VIENNA_RNA_PACKAGE_DUPLEX_H__
00002 #define __VIENNA_RNA_PACKAGE_DUPLEX_H__
00003
00004 #include "data_structures.h"
00005
00012 duplexT duplexfold( const char *s1,
00013 const char *s2);
00014
00015 duplexT *duplex_subopt( const char *s1,
00016 const char *s2,
00017 int delta,
00018 int w);
00019
00020 duplexT aliduplexfold(const char *s1[],
00021 const char *s2[]);
00022
00023 duplexT *aliduplex_subopt(const char *s1[],
00024 const char *s2[],
00025 int delta,
00026 int w);
00027
00028 #endif
