00001 #ifndef __VIENNA_RNA_PACKAGE_PART_FUNC_UP_H__
00002 #define __VIENNA_RNA_PACKAGE_PART_FUNC_UP_H__
00003
00004 #include "data_structures.h"
00005
00006 #define RNA_UP_MODE_1 1U
00007 #define RNA_UP_MODE_2 2U
00008 #define RNA_UP_MODE_3 4U
00009
00051 pu_contrib *pf_unstru(char *sequence,
00052 int max_w);
00053
00096 interact *pf_interact(const char *s1,
00097 const char *s2,
00098 pu_contrib *p_c,
00099 pu_contrib *p_c2,
00100 int max_w,
00101 char *cstruc,
00102 int incr3,
00103 int incr5);
00104
00108 void free_interact(interact *pin);
00109
00113 int Up_plot(pu_contrib *p_c,
00114 pu_contrib *p_c_sh,
00115 interact *pint,
00116 char *ofile,
00117 int **unpaired_values,
00118 char *select_contrib,
00119 char *head,
00120 unsigned int mode);
00121
00125 pu_contrib *get_pu_contrib_struct( unsigned int n,
00126 unsigned int w);
00127
00131 void free_pu_contrib_struct(pu_contrib *pu);
00132
00133 #endif
