############### 5.17 complementBed ############### **complementBed** returns the intervals in a genome that are not by the features in a feature file. An example usage of this tool would be to return the intervals of the genome that are not annotated as a repeat. ========================================================================== 5.17.1 Usage and option summary ========================================================================== Usage: :: complementBed [OPTIONS] -i -g **No additional options.** ========================================================================== 5.17.2 Default behavior ========================================================================== Figure: :: Chromosome ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BED FILE A ************* *************** ****************** Result === === ===== ======= For example: :: cat A.bed chr1 100 200 chr1 400 500 chr1 500 800 cat my.genome chr1 1000 complementBed -i A.bed -g my.genome chr1 0 100 chr1 200 400 chr1 800 1000