Citing MEME
Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to
discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
[postscript]
[pdf]
Citing MAST
Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches",
Bioinformatics, Vol. 14, pp. 48-54, 1998.
[postscript]
[pdf]
Citing GLAM2 and GLAM2SCAN
MC Frith, NFW Saunders, B Kobe, TL Bailey,
"Discovering sequence motifs with arbitrary
insertions and deletions",
PLoS Computational Biology, 4(5):e1000071, 2008.
[full text]
Citing TOMTOM
Shobhit Gupta, JA Stamatoyannopolous,
Timothy Bailey and William Stafford Noble,
"Quantifying similarity between motifs",
Genome Biology, 8(2):R24, 2007.
[full text]
Citing GOMO
Fabian A. Buske, Mikael Boden, Denis C. Bauer and Timothy L. Bailey,
"Assigning roles to DNA regulatory motifs using comparative genomics",
Bioinformatics, 26, 860-866, 2010.
[full text]
Mikael Boden and Timothy L. Bailey,
"Associating transcription factor binding site motifs with target Go terms and target genes",
Nucl. Acids Res, 36, 4108-4117, 2008.
[full text]
Citing PSPs
Timothy L. Bailey, Mikael Bodén, Tom Whitington, and Philip Machanick,
"The value of position-specific priors in motif
discovery using MEME",
BMC Bioinformatics, 11(1):179, 2010.
[full text]
Citing MCAST
Timothy Bailey and William Stafford Noble,
"Searching for statistically significant regulatory modules",
Bioinformatics (Proceedings of the European Conference on Computational Biology),
19(Suppl. 2):ii16-ii25, 2003.
[full text]