This is part of the output of the command
qod --verbose --axt \
--ref-seq genomes/Escherichia_coli/AP009048_GR.fsa.gz \
--annotations genomes/Escherichia_coli/AP009048_GR.tbl.gz \
alignments/Escherichia_coli/AP009048_GR_CP00024*.axt.gz
where the fsa.gz and the tbl.gz (but not the axt.gz) files are provided in the sample directory of the qod package:
*******************************************************************************
* *
* The QOD project aims to compare multiple genomes. *
* qod version 1.0.2 *
* *
* Copyright © 2009-2012 -- LIRMM/CNRS *
* (Laboratoire d'Informatique, de Robotique et de *
* Microélectronique de Montpellier / *
* Centre National de la Recherche Scientifique). *
* *
* Auteurs/Authors: The QOD Project <qod-project@lirmm.fr> *
* Alban MANCHERON <alban.mancheron@lirmm.fr> *
* Eric RIVALS <eric.rivals@lirmm.fr> *
* Raluca URICARU <raluca.uricaru@lirmm.fr> *
* *
* Utilisez l'option '--full-version' pour de plus amples details. *
* Run with the '--full-version' option for more details. *
* *
*******************************************************************************
Length of the central genome sequence [from file 'genomes/Escherichia_coli/AP009048_GR.fsa.gz']: 4646332.
Reading features of sequence 'dbj|AP009048.1|' from file:
* /home/doccy/Work/QOD/Data/genomes/Escherichia_coli/AP009048_GR.tbl.gz
Local similarities files:
* alignments/Escherichia_coli/AP009048_GR_CP000243_GR_10.axt.gz
* alignments/Escherichia_coli/AP009048_GR_CP000247_GR_10.axt.gz
Segmentation:
[1 ; 15390] [16691 ; 16835] [16728 ; 17166] [17142 ; 58179] [59255 ; 59670]
⋮
[4633324 ; 4633534] [4633350 ; 4633538] [4633358 ; 4633553] [4633374 ; 4633569]
[4633407 ; 4633570] [4633418 ; 4633581] [4633511 ; 4646332]
* Filtering with [1 ; 15390] (1 available multiple alignment)
-: AGCTTTTCATTCTGACTGCAACGGGC[...]TGTAAAGTGGCGGGGATCACTCCC // [1 ; 15390]
0: AGCTTTTCATTCTGACTGCAACGGGC[...]TGTAAAGTGGCGGGGATCACTCCC // [1 ; 15442]
-: AGCTTTTCATTCTGACTGCAACGGGC[...]TGTAAAGTGGCGGGGATCACTCCC // [1 ; 15390]
1: AGCTTTTCATTCTGACTGCAACGGGC[...]TGTAAAGTGGCGGGGATCACTCCC // [1 ; 15455]
* Filtering with [16691 ; 16835] (1 available multiple alignment)
-: ATTCT-TCAGATGGTTCAAC---CC[...]GTCTTTTCTCGTTACCAGCGCCGCC // [16691 ; 16844]
0: ATTCTGCCAAATCGTTGAAATTACT[...]GTCTTTTTTCGTTACCTCTTCCCCC // [1530398 ; 1530554] (inverted)
-: ATTCT-TCAGATGGTTCAAC---CC[...]CTCACAGAGGTCTTTTCTCGTTACC // [16691 ; 16835]
1: ATTCTGCCAAATCGTTGAAATTACT[...]CTGGTGGAGGTCTTTTTTCGTTACC // [1432551 ; 1432698] (inverted)
* Filtering with [16728 ; 17166] (1 available multiple alignment)
-: GGGATCACTCCCCGCCGTTGCTCTT[...]-TTTAACTTTAATTTATCTCTTCAT // [16728 ; 17177]
0: GGGATCACTCCCCGCCGTTGCTCTT[...]TTTTAACTCTTATGTGCGTTTTCAT // [15431 ; 15881]
-: GGGATCACTCCCCGCCGTTGCTCTT[...]TG-ATTTAATTATTTAACTTTAATT // [16728 ; 17166]
1: GGGATCACTCCCCGCCGTTGCTCTT[...]TACATCAATTTATTTAAC-TTAAAT // [15444 ; 15882]
* Filtering with [17142 ; 58179] (1 available multiple alignment)
-: ATGATTTAATTATTTAACTTTAATT[...]AAAGCAGCAGAAAGGGTTTAAATGA // [17142 ; 58179]
0: ATCCTTTCCTTATATCATTGAACCG[...]AAAGCAGCAGAAAGGGTTTAAATAA // [19774 ; 61377]
-: ATGATTTAATTATTTAACTTTAATT[...]AAAGCAGCAGAAAGGGTTTAAATGA // [17142 ; 58179]
1: ATCCTTTCCTTATATCATTGAACCG[...]AAAGCAGCAGAAAGGGTTTAAATAA // [19790 ; 60284]
* Filtering with [59255 ; 59670] (1 available multiple alignment)
-: GCAATTATTGAATGAGCCAGAATAA[...]GAGGCAGCCCTTAGGATGAGGGTAT // [59255 ; 59670]
0: GCAATGGCTTGCGGGGACACAGACG[...]GAGACAGTACTTATCTGGAGGTAAT // [1121975 ; 1122368]
-: GCAATTATTGAATGAGCCAGAATAA[...]GAGGCAGCCCTTAGGATGAGGGTAT // [59255 ; 59670]
1: GCAATGGCTTGCGGGGACACAGACG[...]GAGACAGTACTTATCTGGAGGTAAT // [333904 ; 334297]
⋮
* Filtering with [4633324 ; 4633534] (1 available multiple alignment)
-: AAAAAACCTGCACGGGTGACCCGCC[...]CGCGCCGCATCCGGCATTTTACGCA // [4633324 ; 4633534]
0: AAAACAGACGCTGACGGTATATGCC[...]TACGCCGCATCCGGCAATCCGTGCA // [2453176 ; 2453384] (inverted)
-: AAAAAACCTGCACGGGTGACCCGCC[...]CGCGCCGCATCCGGCATTTTACGCA // [4633324 ; 4633534]
1: AAAACAGACGCTGACGGTATATGCC[...]TACGCCGCATCCGGCAATCCGTGCA // [2353921 ; 2354129] (inverted)
* Filtering with [4633350 ; 4633538] (1 available multiple alignment)
-: CGAAATTGAGGATGCTAAGGCTGTT[...]G--CATCCGGCATTTTACGCATTAC // [4633350 ; 4633538]
0: CAATATATTGAATTTGCACGATTTT[...]GCTCGTTCAGCACTTCACCCATCGC // [9867 ; 10049]
-: CGAAATTGAGGATGCTAAGGCTGTT[...]G--CATCCGGCATTTTACGCATTAC // [4633350 ; 4633538]
1: CAATATATTGAATTTGCACGATTTT[...]GCTCGTTCAGCACTTCACCCATCGC // [9880 ; 10062]
* Filtering with [4633358 ; 4633553] (1 available multiple alignment)
-: AGGATGCTAAGGCTGTTGTAGACCG[...]CGCAT--TACTTCGCAATACGCTTG // [4633358 ; 4633553]
0: ACGTTGTTTAACGTGCCGTAGGCCG[...]CGCACAATGCCTGATGCGACGCTTG // [5038186 ; 5038367]
-: AGGATGCTAAGGCTGTTGTAGACCG[...]CGCAT--TACTTCGCAATACGCTTG // [4633358 ; 4633553]
1: ACGTTGTTTAACGTGCCGTAGGCCG[...]CGCACAATGCCTGATGCGACGCTTG // [4912408 ; 4912589]
* Filtering with [4633374 ; 4633569] (1 available multiple alignment)
-: TGTAGACCGGAAACGGTGTTCACGC[...]ATACGCTTGTACTTGATACGCTTCG // [4633374 ; 4633569]
0: TGTAGGCCGGATAAGGCGTTCACGC[...]ACGCATATTCAGTTTATTGGCGTGG // [394212 ; 394390]
-: TGTAGACCGGAAACGGTGTTCACGC[...]ATACGCTTGTACTTGATACGCTTCG // [4633374 ; 4633569]
1: TGTAGGCCGGATAAGGCGTTCACGC[...]ACGCATATTCAGTTTATTGGCGTGG // [447444 ; 447622]
* Filtering with [4633407 ; 4633570] (1 available multiple alignment)
-: GCATTCGGTGCTCAATGCCTGATGC[...]ACGC-TTGTACTTGATACGCTTCGG // [4633407 ; 4633570]
0: GCATCAGGCACTGAATGCCGGATGC[...]ACGCCTTATCCGTCCTACGGCTCTG // [2255869 ; 2256022] (inverted)
-: GCATTCGGTGCTCAATGCCTGATGC[...]ACGC-TTGTACTTGATACGCTTCGG // [4633407 ; 4633570]
1: GCATCAGGCACTGAATGCCGGATGC[...]ACGCCTTATCCGTCCTACGGCTCTG // [2156169 ; 2156322] (inverted)
* Filtering with [4633418 ; 4633581] (1 available multiple alignment)
-: TCAATGCCTGATGCGACGCTTACCG[...]TTGATACGCTTCGGCTCCAGCGCGT // [4633418 ; 4633581]
0: TTAATGCCGGATGCGACGCCTGCCG[...]TGTCATTGTTTTTCCTCAAGCCGGT // [423165 ; 423330] (inverted)
-: TCAATGCCTGATGCGACGCTTACCG[...]TTGATACGCTTCGGCTCCAGCGCGT // [4633418 ; 4633581]
1: TTAATGCCGGATGCGACGCCTGCCG[...]TGTCATTGTTTTTCCTCAAGCCGGT // [476399 ; 476564] (inverted)
* Filtering with [4633511 ; 4646332] (1 available multiple alignment)
-: GCGCCGCATCCGGCATTTTACGCAT[...]AAAAACGCCTTAGTAAGTATTTTTC // [4633511 ; 4646332]
0: GCGCCGCATCCGGCATTTTACGCAT[...]AAAAACGCCTTAGTAAGTGATTTTC // [5052983 ; 5065741]
-: GCGCCGCATCCGGCATTTTACGCAT[...]AAAAACGCCTTAGTAAGTATTTTTC // [4633511 ; 4646332]
1: GCGCCGCATCCGGCATTTTACGCAT[...]AAAAACGCCTTAGTAAGTGATTTTC // [4926162 ; 4938920]
Partition:
P#1 => [1 ; 15390]: 1 covering interval and 1 available multiple alignment.
A#1 => Available Annotations:
* [190 ; 255]
=> Potential Annotation Transfers:
0: [190 ; 255] [190 ; 255] (W:66 | tv:0 | tr:0 | indels:0):
ATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGA
1: [190 ; 255] [190 ; 255] (W:66 | tv:0 | tr:0 | indels:0):
ATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGA
+ gene:
- gene := thrL
+ CDS:
- note := ECK0001:JW4367:b0001
- product := thr operon leader peptide
- protein_id := dbj|BAE76026.1|
* [337 ; 2799]
=> Potential Annotation Transfers:
0: [337 ; 2799] [336 ; 2798] (W:2406 | tv:13 | tr:44 | indels:0):
ATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAA[...]TTTGCTGATCTGCTACGTACCCTCTCATGGAAGTTAGGAGTCTGA
|||||||||||||||||||||||||||||||||||||||||||||[...]|||||||||||||||||||||||||||||||||||||||||||||
ATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAA[...]TTTGCTGATCTGCTACGTACCCTCTCATGGAAGTTAGGAGTCTGA
1: [337 ; 2799] [336 ; 2798] (W:2407 | tv:12 | tr:44 | indels:0):
ATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAA[...]TTTGCTGATCTGCTACGTACCCTCTCATGGAAGTTAGGAGTCTGA
|||||||||||||||||||||||||||||||||||||||||||||[...]|||||||||||||||||||||||||||||||||||||||||||||
ATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAA[...]TTTGCTGATCTGCTACGTACCCTCTCATGGAAGTTAGGAGTCTGA
+ gene:
- gene := thrA
+ CDS:
- note := ECK0002:JW0001:b0002
- product := fused aspartokinase I and homoserine dehydrogenase I
- protein_id := dbj|BAB96579.2|
⋮
* [14168 ; 15298]
=> Potential Annotation Transfers:
0: [14168 ; 15298] [14219 ; 15349] (W:1108 | tv:1 | tr:22 | indels:0):
ATGGCTAAGCAAGATTATTACGAGATTTTAGGCGTTTCCAAAACA[...]TTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAA
|||||||||||||||||||||||||||||||||||||||||||||[...]|||||||||||:||||||||||||||||||||||||||:||||||
ATGGCTAAGCAAGATTATTACGAGATTTTAGGCGTTTCCAAAACA[...]TTCTTTGATGGCGTGAAGAAGTTTTTTGACGACCTGACTCGCTAA
1: [14168 ; 15298] [14232 ; 15362] (W:1109 | tv:1 | tr:21 | indels:0):
ATGGCTAAGCAAGATTATTACGAGATTTTAGGCGTTTCCAAAACA[...]TTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAA
|||||||||||||||||||||||||||||||||||||||||||||[...]|||||||||||:||||||||||||||||||||||||||:||||||
ATGGCTAAGCAAGATTATTACGAGATTTTAGGCGTTTCCAAAACA[...]TTCTTTGATGGCGTGAAGAAGTTTTTTGACGACCTGACTCGCTAA
+ gene:
- gene := dnaJ
+ CDS:
- note := ECK0015:JW0014:b0015
- product := chaperone Hsp40, co-chaperone with DnaK
- protein_id := dbj|BAB96590.1|
P#2 => [15391 ; 16690]: 0 covering interval and 0 available multiple alignment.
A#2 => Available Annotations:
* [15445 ; 16557]
+ gene:
- gene := insL
+ CDS:
- note := ECK0016:JW0015:b0016
- product := IS186/IS421 transposase
- protein_id := dbj|BAE76030.1|
P#3 => [16691 ; 16727]: 1 covering interval and 1 available multiple alignment.
A#3 => No Available Annotation.
P#4 => [16728 ; 16835]: 2 covering intervals and 4 available multiple alignments.
A#4 => Available Overlapping Annotations:
* [16751 ; 16903] (inverted)
+ gene:
- gene := hokC
+ CDS:
- gene := hokC
- note := ECK0017:JW5002:b4412
- product := toxic membrane protein, small
- protein_id := dbj|BAE76031.1|
* [16751 ; 16960] (inverted)
+ gene:
- gene := mokC
+ CDS:
- note := ECK0018:JW5879:b0018
- product := regulatory protein for HokC, overlaps CDS of hokC
- protein_id := dbj|BAB96591.1|
P#5 => [16836 ; 17141]: 1 covering interval and 1 available multiple alignment.
A#5 => Available Annotations:
* [16952 ; 17006]
=> Potential Annotation Transfers:
0: [16952 ; 17006] [15655 ; 15709] (W:53 | tv:1 | tr:1 | indels:0):
GTTCAGCATATAGGAGGCCTCGGGTTGATGGTAAAATATCACTCGGGGCTTTTCT
||||.|||||||||:||||||||||||||||||||||||||||||||||||||||
GTTCTGCATATAGGGGGCCTCGGGTTGATGGTAAAATATCACTCGGGGCTTTTCT
1: [16952 ; 17006] [15668 ; 15722] (W:53 | tv:1 | tr:1 | indels:0):
GTTCAGCATATAGGAGGCCTCGGGTTGATGGTAAAATATCACTCGGGGCTTTTCT
||||.|||||||||:||||||||||||||||||||||||||||||||||||||||
GTTCTGCATATAGGGGGCCTCGGGTTGATGGTAAAATATCACTCGGGGCTTTTCT
+ gene:
- gene := sokC
+ misc_RNA:
- note := ECK0019:JWR0224:b4413
- product := regulatory antisense RNA
A#5 => Available Overlapping Annotations:
* [16751 ; 16903] (inverted)
+ CDS:
- gene := hokC
- note := ECK0017:JW5002:b4412
- product := toxic membrane protein, small
- protein_id := dbj|BAE76031.1|
+ gene:
- gene := hokC
* [16751 ; 16960] (inverted)
+ CDS:
- note := ECK0018:JW5879:b0018
- product := regulatory protein for HokC, overlaps CDS of hokC
- protein_id := dbj|BAB96591.1|
+ gene:
- gene := mokC
P#6 => [17142 ; 17166]: 2 covering intervals and 4 available multiple alignments.
A#6 => No Available Annotation.
P#7 => [17167 ; 58179]: 1 covering interval and 1 available multiple alignment.
A#7 => Available Annotations:
* [17489 ; 18655]
=> Potential Annotation Transfers:
0: [17489 ; 18655] [20115 ; 21281] (W:1085 | tv:30 | tr:52 | indels:0):
GTGAAACATCTGCATCGATTCTTTAGCAGTGATGCCTCGGGAGGC[...]ATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGA
|||||||||||||||||||||||||||||||||||||||||||||[...]||||||||:||||||||||||||||||||:|||||||||||||||
GTGAAACATCTGCATCGATTCTTTAGCAGTGATGCCTCGGGAGGC[...]ATTGGATATAGCTGGTTACGCGTTCGTTTACGTCCATCAGTTTGA
1: [17489 ; 18655] [20131 ; 21297] (W:1087 | tv:30 | tr:50 | indels:0):
GTGAAACATCTGCATCGATTCTTTAGCAGTGATGCCTCGGGAGGC[...]ATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGA
|||||||||||||||||||||||||||||||||||||||||||||[...]||||||||:||||||||||||||||||||:|||||||||||||||
GTGAAACATCTGCATCGATTCTTTAGCAGTGATGCCTCGGGAGGC[...]ATTGGATATAGCTGGTTACGCGTTCGTTTACGTCCATCAGTTTGA
+ gene:
- gene := nhaA
+ CDS:
- note := ECK0020:JW0018:b0019
- product := sodium-proton antiporter
- protein_id := dbj|BAB96592.1|
⋮
* [57364 ; 58179]
=> Potential Annotation Transfers:
0: [57364 ; 58179] [60562 ; 61377] (W:798 | tv:7 | tr:11 | indels:0):
ATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTG[...]CAGCAGGCATATGAGCTGATAAAGCAGCAGAAAGGGTTTAAATGA
||||||||||||||||||||||||||||||||||||||||||.|:[...]||||||||.||||||||||||||||||||||||||||||||||:|
ATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTAATA[...]CAGCAGGCCTATGAGCTGATAAAGCAGCAGAAAGGGTTTAAATAA
1: [57364 ; 58179] [59469 ; 60284] (W:801 | tv:6 | tr:9 | indels:0):
ATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTG[...]CAGCAGGCATATGAGCTGATAAAGCAGCAGAAAGGGTTTAAATGA
||||||||||||||||||||||||||||||:|||||||||||.|:[...]||||||||.||||||||||||||||||||||||||||||||||:|
ATGCAGTATTGGGGAAAAATCATTGGCGTGACCGTGGCCTTAATA[...]CAGCAGGCCTATGAGCTGATAAAGCAGCAGAAAGGGTTTAAATAA
+ gene:
- gene := djlA
+ CDS:
- note := ECK0056:JW0054:b0055
- product := DnaJ-like protein, membrane anchored
- protein_id := dbj|BAB96623.1|
P#8 => [58180 ; 59254]: 0 covering interval and 0 available multiple alignment.
A#8 => Available Annotations:
* [58474 ; 59124]
+ gene:
- gene := yabP
+ CDS:
- note := ECK0057:JW0055:b0056
- product := hypothetical protein
- protein_id := dbj|BAB96624.2|
A#8 => Available Overlapping Annotations:
* [59121 ; 59279]
+ gene:
- gene := yabQ
+ CDS:
- note := ECK0058:JW0056:b0057
- product := hypothetical protein
- protein_id := dbj|BAB96625.1|
P#9 => [59255 ; 59670]: 1 covering interval and 1 available multiple alignment.
A#9 => Available Overlapping Annotations:
* [59121 ; 59279]
+ CDS:
- note := ECK0058:JW0056:b0057
- product := hypothetical protein
- protein_id := dbj|BAB96625.1|
+ gene:
- gene := yabQ
⋮
P#1910 => [4633407 ; 4633417]: 5 covering intervals and 30 available multiple alignments.
A#1910 => No Available Annotation.
P#1911 => [4633418 ; 4633510]: 6 covering intervals and 42 available multiple alignments.
A#1911 => No Available Annotation.
P#1912 => [4633511 ; 4633534]: 7 covering intervals and 49 available multiple alignments.
A#1912 => No Available Annotation.
P#1913 => [4633535 ; 4633538]: 6 covering intervals and 36 available multiple alignments.
A#1913 => Available Overlapping Annotations:
* [4633535 ; 4635202] (inverted)
+ gene:
- gene := yjjK
+ CDS:
- note := ECK4383:JW4354:b4391
- product := fused predicted transporter subunits and ATP-binding components of ABC superfamily
- protein_id := dbj|BAE78380.1|
P#1914 => [4633539 ; 4633553]: 5 covering intervals and 25 available multiple alignments.
A#1914 => Available Overlapping Annotations:
* [4633535 ; 4635202] (inverted)
+ CDS:
- note := ECK4383:JW4354:b4391
- product := fused predicted transporter subunits and ATP-binding components of ABC superfamily
- protein_id := dbj|BAE78380.1|
+ gene:
- gene := yjjK
P#1915 => [4633554 ; 4633569]: 4 covering intervals and 16 available multiple alignments.
A#1915 => Available Overlapping Annotations:
* [4633535 ; 4635202] (inverted)
+ CDS:
- note := ECK4383:JW4354:b4391
- product := fused predicted transporter subunits and ATP-binding components of ABC superfamily
- protein_id := dbj|BAE78380.1|
+ gene:
- gene := yjjK
P#1916 => [4633570 ; 4633570]: 3 covering intervals and 9 available multiple alignments.
A#1916 => Available Overlapping Annotations:
* [4633535 ; 4635202] (inverted)
+ CDS:
- note := ECK4383:JW4354:b4391
- product := fused predicted transporter subunits and ATP-binding components of ABC superfamily
- protein_id := dbj|BAE78380.1|
+ gene:
- gene := yjjK
P#1917 => [4633571 ; 4633581]: 2 covering intervals and 4 available multiple alignments.
A#1917 => Available Overlapping Annotations:
* [4633535 ; 4635202] (inverted)
+ CDS:
- note := ECK4383:JW4354:b4391
- product := fused predicted transporter subunits and ATP-binding components of ABC superfamily
- protein_id := dbj|BAE78380.1|
+ gene:
- gene := yjjK
P#1918 => [4633582 ; 4646332]: 1 covering interval and 1 available multiple alignment.
A#1918 => Available Annotations:
* [4635413 ; 4637350]
=> Potential Annotation Transfers:
0: [4635413 ; 4637350] [5054881 ; 5056818] (W:1903 | tv:8 | tr:27 | indels:0):
GTGGAAAAAGCCAAACAAGTTACCTGGCGGCTGTTGGCTGCCGGT[...]AAACCGACGTTGATGAGCGCCACGGAATGGGGACGTCGTTACTGA
|||||||||||||||||.||||||||||||||||||||||:||||[...]|||||||||||||||||||||||||||||||||||||||||||||
GTGGAAAAAGCCAAACACGTTACCTGGCGGCTGTTGGCTGTCGGT[...]AAACCGACGTTGATGAGCGCCACGGAATGGGGACGTCGTTACTGA
1: [4635413 ; 4637350] [4928060 ; 4929997] (W:1904 | tv:8 | tr:26 | indels:0):
GTGGAAAAAGCCAAACAAGTTACCTGGCGGCTGTTGGCTGCCGGT[...]AAACCGACGTTGATGAGCGCCACGGAATGGGGACGTCGTTACTGA
|||||||||||||||||.||||||||||||||||||||||:||||[...]|||||||||||||||||||||||||||||||||||||||||||||
GTGGAAAAAGCCAAACACGTTACCTGGCGGCTGTTGGCTGTCGGT[...]AAACCGACGTTGATGAGCGCCACGGAATGGGGACGTCGTTACTGA
+ gene:
- gene := slt
+ CDS:
- note := ECK4384:JW4355:b4392
- product := lytic murein transglycosylase, soluble
- protein_id := dbj|BAE78381.1|
⋮
* [4645622 ; 4646308]
=> Potential Annotation Transfers:
0: [4645622 ; 4646308] [5065031 ; 5065717] (W:667 | tv:6 | tr:14 | indels:0):
ATGCGTATAACGATTATTCTGGTCGCACCCGCCAGAGCAGAAAAT[...]TTGCACCGTTTGCTGCATGATATTGAAAAAAATATCACCAAATAA
|||||||||||||||||||||||:|||||||||||||||||||||[...]|||||||||||||||||||||||||||||||||||||||||||||
ATGCGTATAACGATTATTCTGGTTGCACCCGCCAGAGCAGAAAAT[...]TTGCACCGTTTGCTGCATGATATTGAAAAAAATATCACCAAATAA
1: [4645622 ; 4646308] [4938210 ; 4938896] (W:669 | tv:6 | tr:12 | indels:0):
ATGCGTATAACGATTATTCTGGTCGCACCCGCCAGAGCAGAAAAT[...]TTGCACCGTTTGCTGCATGATATTGAAAAAAATATCACCAAATAA
|||||||||||||||||||||||:|||||||||||||||||||||[...]|||||||||||||||||||||||||||||||||||||||||||||
ATGCGTATAACGATTATTCTGGTTGCACCCGCCAGAGCAGAAAAT[...]TTGCACCGTTTGCTGCATGATATTGAAAAAAATATCACCAAATAA
+ gene:
- gene := yjtD
+ CDS:
- note := ECK4395:JW4366:b4403
- product := predicted rRNA methyltransferase
- protein_id := dbj|BAE78392.1|
A#1918 => Available Overlapping Annotations:
* [4633535 ; 4635202] (inverted)
+ CDS:
- note := ECK4383:JW4354:b4391
- product := fused predicted transporter subunits and ATP-binding components of ABC superfamily
- protein_id := dbj|BAE78380.1|
+ gene:
- gene := yjjK
That's All, Folks!!!