Qualimap 0.7.1 documentation
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Contents
ΒΆ
Introduction
What is Qualimap?
Installation
Requirements
Installing Qualimap on Ubuntu
Install JAVA
Install R
Install required R-packages
Citing Qualimap
Workflow
Starting a new analysis
Viewing the results of the analysis
Exporting results
Using tools
Analysis types
BAM QC
Examples
Input Parameters
Advanced parameters
Output
Counts QC
Example
Input Parameters
Output
Global Plots
Individual Group Plots
Tools
Compute counts
Example
Input
Output
Clustering
Input Parameters
Output
Command Line Interface
General Description
BAM QC
Counts QC
Clustering
Compute counts
Examples
Sample Data
Alignments
Annotations
Counts
Clustering
Sample Output
BAM QC
Counts QC
Clustering
Frequently Asked Questions
General
Command line
Performance
Table Of Contents
Introduction
Workflow
Analysis types
Tools
Command Line Interface
Examples
Frequently Asked Questions
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