Examples

Sample Data

Alignments

• ERR089819.bam (2.6 GB)

  Whole genome sequencing data of C. elegans from the following study.

• HG00096.chrom20.bam (278 MB)

  Sequencing of the chromosome 20 from a H. sapiens sample from 1000 Genomes project. The header of the BAM file was changed in order to contain only chromosome 20. Original file can be found here.

Annotations

• human.64.gtf

  Human genome annotations from Ensembl database (v. 64).

• transcripts.human.64.bed

  Human transcripts in BED format from Ensembl database (v. 64).

Counts

Human RNA-seq data from the paper of Marioni JC et al.

• Counts:

  kidney.counts and liver.counts

• BAM files used to produce the counts:

  kidney.bam and liver.bam

• Genes Biotypes:

  human.64.genes.biotypes.txt

Clustering

• hmeDIP.bam (988M)

  MeDIP-seq of human embryonic stem cells from the study of Stroud H et al.

• input.bam (1.8G)

  Input data of the same study

Sample Output

BAM QC

Analysis of the WG-seq data (ERR089819.bam): QualiMap HTML report.

Analysis of the WG-seq data (HG00096.chrom20.bam): QualiMap HTML report.

Counts QC

Analysis of RNA-seq counts data: QualiMap HTML report.

Clustering

Analysis of MeDIP-seq data: QualiMap HTML report.