AutoSeqFormat

Class

AutoSeqFormat

Auto-detects and stores a file format.

AutoSeqFormat

Include Headers

seqan/file.h

Remarks

Currently, it is defined as TagSelector<SeqFormats>, with:

    typedef
        TagList<Fastq,
        TagList<Fasta,
        TagList<QSeq,
        TagList<Raw> > > >                         SeqFormats;

Specialization of

Functions

appendSeqs	Appends all sequences stored in files of directory to a StringSet.
assignCroppedSeqId	Extracts the sequence id up to the first whitespace of a sequence file fragment.
assignQual	Extracts the quality values of a sequence file fragment.
assignQualId	Extracts the quality value id of a sequence file fragment.
assignSeq	Extracts the sequence part of a sequence file fragment.
assignSeqId	Extracts the sequence id of a sequence file fragment.
guessFormat	Guesses a file format from the contents of a sequence file.
guessFormatFromFilename	Guesses a file format from a sequence file name.
split	Divides the contents of a sequence file into sequence file fragments separated by a file format specific delimiter.

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