Class Specialization
SumlistGaps
Stores gaps in a Sumlist.
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SumlistGaps | |||||||
Include Headers
seqan/align.h
Parameters
Type of the ungapped sequence. Metafunctions: Source |
Specialization of
Metafunctions
| The type returned by the source function. (Gaps) | |
| Type for reading values. (Gaps) | |
| Type of iterator objects that are used to traverse the container. (Gaps) | |
| Type of an object that represents a position in a container. (Gaps) | |
| Reference type. (Gaps) | |
| The underlying sequence for alignments or gaps data structures. (Gaps) | |
| The spec of a class. (Gaps) | |
| Type of the items in the container. (Gaps) |
Functions
| Assigns the source to a new value. (Gaps) | |
| The begin of a container. (Gaps) | |
| Remove blanks from a gapped sequence. (Gaps) | |
| Begin position of the source segment. (Gaps) | |
| Position of the end of the source segment. (Gaps) | |
| Count characters at a specific position in a gapped sequence. (Gaps) | |
| Count blanks at a specific position in a gapped sequence. (Gaps) | |
| Creates a new source. (Gaps) | |
| Test if object depends from it's source. (Gaps) | |
| Makes an object independent from other objects. (Gaps) | |
| Test if there is a source. (Gaps) | |
| The end of a container. (Gaps) | |
| Access to the value. (Gaps) | |
| A value that identifies the underlying sequence. (Gaps) | |
| Insert one blank into a gapped sequence. (Gaps) | |
| Insert blanks into a gapped sequence. (Gaps) | |
| Test a gapped sequence for gaps at a specific position. (Gaps) | |
| The number of items/characters. (Gaps) | |
| The number of items/characters. (Gaps) | |
| Moves the source to a new value. (Gaps) | |
| Removes one blank from a gapped sequence. (Gaps) | |
| Removes blanks from a gapped sequence. (Gaps) | |
| Let an external object be the source. (Gaps) | |
| The source of an object. (Gaps) | |
| Begin of the source segment. (Gaps) | |
| End of the source segment. (Gaps) | |
| Length of the source. (Gaps) | |
| The used part of the source. (Gaps) | |
| Transforms view to source position, if the view position is a gap, the original position of the next non-gap entry is returned. (Gaps) | |
| Transforms source to view position. (Gaps) | |
| Reference to the value. (Gaps) |
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