Using non human/worm/fly genomic DNA

At the moment, genewise only has gene frequency files for human and worm sequences. The production of these files are based around somewhat annoying and non portable script. In any case, making a dataset requires alot of effort as it needs to be clean

The consequence of all this is that the species that you are comparing against (eg, hamster) may not have a gene frequency (.gf) file. In which case you basically have two options

• Use a close species - ie, for hamster, use human or rat
• Use -splice flat -intron tied which switches the splice model to ``start at GT, finish at AG'' with no other information