genewisedb output - for each comparison

For each alignment made by genewisedb you can output it as a number of different options

-pretty

show pretty ascii output, as in genewise

-pseudo

For genes with frameshifts, mark them as pseudo genes

-genes

show gene structure, as in genewise

-para

show parameters, as in genewise

-sum

show summary output, as in genewise

-cdna

show cDNA, as in genewise

-trans

show protein translation, as in genewise

-ace

ace file gene structure, as in genewise

-gff

Gene Feature Format file, as in genewise

-gener

raw gene structure, as in genewise

-alb

show logical AlnBlock alignment, as in genewise

-pal

show raw matrix alignment, as in genewise

-block

[50] Length of main block in pretty output, as in genewise

-divide

[//] divide string for multiple outputs, as in genewise