estwisedb - options: output

-pretty

show pretty ascii output

-para

show parameters

-sum

show summary output

-alb

show logical AlnBlock alignment

-pal

show raw matrix alignment

-mul

produce complete protein multiple alignment from a HMM to DNA db search as a mul format M/A.

-pep

show predicted peptide. Shows predicted peptide, including frameshifts, which are X's in the proteins

-block

[50] Length of main block in pretty output

-divide

[//] divide string for multiple outputs

-help

help

-version

show version and compile info

-silent

No messages on stderr

-quiet

No report on stderr

-erroroffstd

No warning messages to stderr

-errorlog

[file] Log warning messages to file