00001 #ifndef __VIENNA_RNA_PACKAGE_PS_DOT_H__
00002 #define __VIENNA_RNA_PACKAGE_PS_DOT_H__
00003
00004 #include "data_structures.h"
00005 #include "plot_layouts.h"
00006
00007 #ifdef __GNUC__
00008 #define DEPRECATED(func) func __attribute__ ((deprecated))
00009 #else
00010 #define DEPRECATED(func) func
00011 #endif
00012
00019
00020 int PS_rna_plot_snoop_a(char *string,
00021 char *structure,
00022 char *ssfile,
00023 int *relative_access,
00024 const char *seqs[]);
00025
00038 int PS_rna_plot(char *string,
00039 char *structure,
00040 char *file);
00041
00060 int PS_rna_plot_a(char *string,
00061 char *structure,
00062 char *file,
00063 char *pre,
00064 char *post);
00065
00078 int gmlRNA( char *string,
00079 char *structure,
00080 char *ssfile,
00081 char option);
00082
00093 int ssv_rna_plot( char *string,
00094 char *structure,
00095 char *ssfile);
00096
00105 int svg_rna_plot( char *string,
00106 char *structure,
00107 char *ssfile);
00108
00117 int xrna_plot(char *string,
00118 char *structure,
00119 char *ssfile);
00120
00121
00122 int PS_color_dot_plot(char *string,
00123 cpair *pi,
00124 char *filename);
00125
00126 int PS_color_dot_plot_turn( char *seq,
00127 cpair *pi,
00128 char *filename,
00129 int winSize);
00130
00150 int PS_dot_plot_list( char *seq,
00151 char *filename,
00152 plist *pl,
00153 plist *mf,
00154 char *comment);
00155
00156 int PS_dot_plot_turn( char *seq,
00157 struct plist *pl,
00158 char *filename,
00159 int winSize);
00160
00161 int PS_color_aln( const char *structure,
00162 const char *filename,
00163 const char *seqs[],
00164 const char *names[]);
00165
00169 int aliPS_color_aln(const char *structure,
00170 const char *filename,
00171 const char *seqs[],
00172 const char *names[]);
00173
00174
00190 DEPRECATED(int PS_dot_plot( char *string,
00191 char *file));
00192 #endif
