RNAlib-2.0.7: H/fold_vars.h Source File

00001 #ifndef __VIENNA_RNA_PACKAGE_FOLD_VARS_H__
00002 #define __VIENNA_RNA_PACKAGE_FOLD_VARS_H__
00003 
00004 #include "data_structures.h"
00005 
00012 #define PUBLIC
00013 #define PRIVATE static
00014 
00018 extern int    fold_constrained;
00019 
00027 extern int    noLonelyPairs;
00028 
00050 extern int  dangles;
00051 
00055 extern int  noGU;
00056 
00060 extern int  no_closingGU;
00061 
00067 extern int  tetra_loop;
00068 
00076 extern int  energy_set;
00077 
00081 extern int  circ;
00082 
00086 extern int  csv;
00087 
00091 extern int oldAliEn;
00095 extern int ribo;            
00096 
00101 extern char *RibosumFile;   
00102 
00110 extern char *nonstandards;
00111 
00118 extern double temperature;
00119 
00124 extern int  james_rule;
00125 
00129 extern int  logML;
00130 
00142 extern int  cut_point;
00143 
00150 extern bondT  *base_pair;
00151 
00157 extern FLT_OR_DBL *pr;
00158 
00165 extern int   *iindx;
00166 
00178 extern double pf_scale;
00179 
00186 extern int    do_backtrack;
00187 
00195 extern char backtrack_type;
00196 
00197 char * option_string(void);
00198 
00209 void set_model_details(model_detailsT *md);
00210 
00211 #endif