00001 #ifndef __VIENNA_RNA_PACKAGE_LPFOLD_H__
00002 #define __VIENNA_RNA_PACKAGE_LPFOLD_H__
00003
00004 #include "data_structures.h"
00005
00006 #ifdef __GNUC__
00007 #define DEPRECATED(func) func __attribute__ ((deprecated))
00008 #else
00009 #define DEPRECATED(func) func
00010 #endif
00011
00029 void update_pf_paramsLP(int length);
00030
00037 void update_pf_paramsLP_par(int length, pf_paramT *parameters);
00038
00076 plist *pfl_fold(char *sequence,
00077 int winSize,
00078 int pairSize,
00079 float cutoffb,
00080 double **pU,
00081 struct plist **dpp2,
00082 FILE *pUfp,
00083 FILE *spup);
00084
00091 plist *pfl_fold_par(char *sequence,
00092 int winSize,
00093 int pairSize,
00094 float cutoffb,
00095 double **pU,
00096 struct plist **dpp2,
00097 FILE *pUfp,
00098 FILE *spup,
00099 pf_paramT *parameters);
00100
00101
00116 void putoutpU_prob(double **pU,
00117 int length,
00118 int ulength,
00119 FILE *fp,
00120 int energies);
00121
00136 void putoutpU_prob_bin(double **pU,
00137 int length,
00138 int ulength,
00139 FILE *fp,
00140 int energies);
00141
00147 DEPRECATED(void init_pf_foldLP(int length));
00148
00149 #endif
