| bondT | Base pair |
| bondTEn | Base pair with associated energy |
| cofoldF | |
| ConcEnt | |
| constrain | Constraints for cofolding |
| COORDINATE | This is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE |
| cpair | This datastructure is used as input parameter in functions of PS_dot.c |
| duplexT | |
| dupVar | |
| folden | |
| interact | |
| intermediate_t | |
| INTERVAL | Sequence interval stack element used in subopt.c |
| LIST | |
| LST_BUCKET | |
| model_detailsT | The data structure that contains the complete model details used throughout the calculations |
| move_t | |
| PAIR | Base pair data structure used in subopt.c |
| pair_info | A base pair info structure |
| pairpro | |
| paramT | The datastructure that contains temperature scaled energy parameters |
| path_t | |
| pf_paramT | The datastructure that contains temperature scaled Boltzmann weights of the energy parameters |
| plist | This datastructure is used as input parameter in functions of PS_dot.h and others |
| Postorder_list | |
| pu_contrib | Contributions to p_u |
| pu_out | Collection of all free_energy of beeing unpaired values for output |
| sect | Stack of partial structures for backtracking |
| snoopT | |
| SOLUTION | Solution element from subopt.c |
| struct_en | |
| svm_model | |
| swString | |
| Tree | |
| TwoDfold_solution | Solution element returned from TwoDfoldList |
| TwoDfold_vars | Variables compound for 2Dfold MFE folding |
| TwoDpfold_solution | Solution element returned from TwoDpfoldList |
| TwoDpfold_vars | Variables compound for 2Dfold partition function folding |
1.6.1