pair_info Struct Reference

A base pair info structure. More...

Data Fields
unsigned	i
	nucleotide position i
unsigned	j
	nucleotide position j
float	p
	Probability.
float	ent
	Pseudo entropy for .
short	bp [8]
	Frequencies of pair_types.
char	comp
	1 iff pair is in mfe structure

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Detailed Description

A base pair info structure.

For each base pair (i,j) with i,j in [0, n-1] the structure lists:

• its probability 'p'
• an entropy-like measure for its well-definedness 'ent'
• the frequency of each type of pair in 'bp[]' + 'bp[0]' contains the number of non-compatible sequences + 'bp[1]' the number of CG pairs, etc.

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The documentation for this struct was generated from the following file:

• /mount/gensoft2/src/ViennaRNA/ViennaRNA-2.1.1/H/data_structures.h