RNAlib-2.1.1: /mount/gensoft2/src/ViennaRNA/ViennaRNA-2.1.1/H/PKplex.h Source File

00001 #ifndef PKPLEX_H
00002 #define PKPLEX_H
00003 
00004 #include "data_structures.h"
00005 
00006 extern dupVar *PlexHits;
00007 extern int    PlexHitsArrayLength;
00008 extern int    NumberOfHits;
00009 extern int    verbose;
00010 
00011 
00015 dupVar  **PKLduplexfold_XS( const char *s1,
00016                             int **access_s1,
00017                             const int threshold,
00018                             const int alignment_length,
00019                             const int delta);
00020 
00021 int     arraySize(duplexT **array);
00022 
00023 void    freeDuplexT(duplexT **array);
00024 
00025 #endif