edu.msu.cme.rdp.classifier.comparison
Class ComparisonBrowserBean

java.lang.Object
  edu.msu.cme.rdp.classifier.comparison.ComparisonBrowserBean

public class ComparisonBrowserBean
extends java.lang.Object

Field Summary

private java.lang.String	classifierVer
private java.lang.String	confidence
private float	confidenceValue
private ComparisonBrowserNode	currentRoot
private static float	DEFAULT_CONF
private static int	DEFAULT_DEPTH
private java.lang.String	depth
private int	depthValue
private static int	DISPLAY_LIMIT
private java.util.List	errorList
private java.lang.String	hierarchyVer
private static float	MAX_CONF
private static int	MAX_DEPTH
private static int	MAX_SEQUENCE
private static float	MIN_CONF
private static int	MIN_DEPTH
private ComparisonBrowserNode	root
private java.lang.String	s1Filename
private java.lang.String	s2Filename
private java.util.Date	submitDate

Constructor Summary

ComparisonBrowserBean(java.lang.String hver, java.lang.String cver)

Method Summary

java.util.Iterator	getChildTaxonList()
java.lang.String	getClassifierVersion()
java.lang.String	getConfidence()
ComparisonBrowserNode	getCurrentBrowserRoot()
static float	getDefaultConfidence()
java.lang.String	getDepth()
java.util.Iterator	getDetailList()
int	getDetailListSize()
float	getFloatConfidence()
java.util.Iterator	getHierarchyTaxonList()
java.lang.String	getHierarchyVersion()
java.util.Iterator	getLineageList()
java.lang.String	getS1Filename()
int	getS1Total()
java.lang.String	getS2Filename()
int	getS2Total()
static int	getSeqCountLimit()
int	getSeqErrorCount()
java.util.Iterator	getSeqErrorList()
java.util.Date	getSubmitDate()
java.util.Iterator	getTabularTaxonList()
void	setConfidence(java.lang.String confidenceStr)
void	setCurrentRoot(java.lang.String tax)
void	setDepth(java.lang.String depthStr)
void	setRoot(ComparisonBrowserNode root)
(package private) void	setS1Filename(java.lang.String s)
(package private) void	setS2Filename(java.lang.String s)
void	setSeqErrorList(java.util.List errorList)
void	setSubmitDate(java.util.Date date)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_DEPTH

private static final int DEFAULT_DEPTH

See Also:

Constant Field Values

DISPLAY_LIMIT

private static final int DISPLAY_LIMIT

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Constant Field Values

MIN_DEPTH

private static final int MIN_DEPTH

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Constant Field Values

MAX_DEPTH

private static final int MAX_DEPTH

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Constant Field Values

MIN_CONF

private static final float MIN_CONF

See Also:

Constant Field Values

MAX_CONF

private static final float MAX_CONF

See Also:

Constant Field Values

MAX_SEQUENCE

private static final int MAX_SEQUENCE

See Also:

Constant Field Values

DEFAULT_CONF

private static final float DEFAULT_CONF

See Also:

Constant Field Values

depthValue

private int depthValue

depth

private java.lang.String depth

confidenceValue

private float confidenceValue

confidence

private java.lang.String confidence

errorList

private java.util.List errorList

currentRoot

private ComparisonBrowserNode currentRoot

root

private ComparisonBrowserNode root

hierarchyVer

private java.lang.String hierarchyVer

classifierVer

private java.lang.String classifierVer

submitDate

private java.util.Date submitDate

s1Filename

private java.lang.String s1Filename

s2Filename

private java.lang.String s2Filename

Constructor Detail

ComparisonBrowserBean

public ComparisonBrowserBean(java.lang.String hver,
                             java.lang.String cver)

Method Detail

getSeqCountLimit

public static int getSeqCountLimit()

getDefaultConfidence

public static float getDefaultConfidence()

getSubmitDate

public java.util.Date getSubmitDate()

setSubmitDate

public void setSubmitDate(java.util.Date date)

getHierarchyVersion

public java.lang.String getHierarchyVersion()

getClassifierVersion

public java.lang.String getClassifierVersion()

getDepth

public java.lang.String getDepth()

setDepth

public void setDepth(java.lang.String depthStr)

getFloatConfidence

public float getFloatConfidence()

getS1Total

public int getS1Total()

getS2Total

public int getS2Total()

setS1Filename

void setS1Filename(java.lang.String s)

setS2Filename

void setS2Filename(java.lang.String s)

getS1Filename

public java.lang.String getS1Filename()

getS2Filename

public java.lang.String getS2Filename()

getConfidence

public java.lang.String getConfidence()

setConfidence

public void setConfidence(java.lang.String confidenceStr)

getSeqErrorCount

public int getSeqErrorCount()

getCurrentBrowserRoot

public ComparisonBrowserNode getCurrentBrowserRoot()

setCurrentRoot

public void setCurrentRoot(java.lang.String tax)

setRoot

public void setRoot(ComparisonBrowserNode root)

getLineageList

public java.util.Iterator getLineageList()

getTabularTaxonList

public java.util.Iterator getTabularTaxonList()

getChildTaxonList

public java.util.Iterator getChildTaxonList()

getHierarchyTaxonList

public java.util.Iterator getHierarchyTaxonList()

getDetailList

public java.util.Iterator getDetailList()

getDetailListSize

public int getDetailListSize()

setSeqErrorList

public void setSeqErrorList(java.util.List errorList)

getSeqErrorList

public java.util.Iterator getSeqErrorList()