edu.msu.cme.rdp.classifier.comparison
Class UncNode

java.lang.Object
  edu.msu.cme.rdp.classifier.comparison.AbstractNode
      edu.msu.cme.rdp.classifier.comparison.UncNode

All Implemented Interfaces:

ComparisonBrowserNode, Taxon

public class UncNode
extends AbstractNode

Nested Class Summary

(package private) class	UncNode.DetailIterator An Iterator of the sequences assigned to the node
(package private) class	UncNode.SampleDetailIterator

Nested classes/interfaces inherited from class edu.msu.cme.rdp.classifier.comparison.AbstractNode

AbstractNode.LineageIterator, AbstractNode.TaxonIterator

Constructor Summary

UncNode(AbstractNode p)
Creates a new instance of UncNode

Method Summary

void	changeConfidence(SigCalculator cal)
ComparisonBrowserNode	findNode(int id)
java.util.Iterator	getDetailIterator(float conf)
(package private) AbstractNode	getFirstChild()
java.lang.String	getName()
java.lang.String	getRank()
int	getTaxid()

Methods inherited from class edu.msu.cme.rdp.classifier.comparison.AbstractNode

addSibling, getDoubleSignificance, getIndent, getLineageIterator, getNextSibling, getParent, getS1Count, getS2Count, getSignificance, getTaxonIterator, incS1Count, incS2Count, resetCount, setIndent, setParent, setSignificance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

UncNode

UncNode(AbstractNode p)

Creates a new instance of UncNode

Method Detail

getFirstChild

AbstractNode getFirstChild()

Specified by:

getFirstChild in class AbstractNode

getName

public java.lang.String getName()

Specified by:

getName in interface Taxon

Specified by:

getName in class AbstractNode

getRank

public java.lang.String getRank()

Specified by:

getRank in interface Taxon

Specified by:

getRank in class AbstractNode

getTaxid

public int getTaxid()

Specified by:

getTaxid in interface Taxon

Specified by:

getTaxid in class AbstractNode

findNode

public ComparisonBrowserNode findNode(int id)

Specified by:

findNode in interface ComparisonBrowserNode

Specified by:

findNode in class AbstractNode

changeConfidence

public void changeConfidence(SigCalculator cal)

Specified by:

changeConfidence in interface ComparisonBrowserNode

Specified by:

changeConfidence in class AbstractNode

getDetailIterator

public java.util.Iterator getDetailIterator(float conf)

Specified by:

getDetailIterator in interface ComparisonBrowserNode

Specified by:

getDetailIterator in class AbstractNode