BlastReport

Class

BlastReport

Object for storing Blast report information.

BlastReport

BlastReport<TBlastHsp, TSpec>

Include Headers

blast.h

Parameters

TBlastHsp	The type of HSPs that are to be stored. Default: BlastHsp<BlastN,BasicInfo> Remarks: see BlastHsp.
TSpec	The specializing type. Types: StoreReport, StreamReport Default: StreamReport Remarks: StoreReport requires more space while StreamReport will be more time consuming if hits are iterated over more than once.

Remarks

Hits and HSPs can be iterated over by using HitIterator and HspIterator.

Specializations

StoreReport	BlastReport specialization. Parses a Blast report and stores all hits and HSPs.
StreamReport	BlastReport specialization that works on a file stream (parses hits/HSPs when iterating over them).

Metafunctions

Hit	Blast Hit type of a Blast object.
Host	Type of the object a given object depends on.
Hsp	Blast HSP type of a Blast object.
Iterator	Type of iterator objects that are used to traverse the container.

Functions

atEnd	Determines whether an iterator is at the end position.
databaseName	Reference to the name (identifier) of the database in a Blast report.
getDatabaseName	The name (identifier) of the database in a Blast report.
getNext	Get next Blast report from a file containing multiple Blast reports.
getQueryName	The name (identifier) of the query in a Blast report.
queryName	Reference to the name (identifier) of the query in a Blast report.

Example Programs

SeqAn - Sequence Analysis Library - www.seqan.de