Class Specialization
StoreReport
BlastReport specialization. Parses a Blast report and stores all hits and HSPs.
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StoreReport | |||||||
Include Headers
blast.h
Parameters
The type of HSPs to be stored. See BlastHsp Metafunctions: Hsp Default: BlastHsp<BlastN,BasicInfo> | |
The specializing type. Default: BasicInfo |
Specialization of
Metafunctions
| Blast Hit type of a Blast object. (BlastReport) | |
| Type of the object a given object depends on. (BlastReport) | |
| Blast HSP type of a Blast object. (BlastReport) | |
| Type of iterator objects that are used to traverse the container. (BlastReport) |
Functions
| Determines whether an iterator is at the end position. (BlastReport) | |
| Reference to the name (identifier) of the database in a Blast report. (BlastReport) | |
| The name (identifier) of the database in a Blast report. (BlastReport) | |
| The Expect-Value cutoff parsed from a Blast report. | |
| The gapped kappa value parsed from a Blast report. | |
| The lambda value parsed from a Blast report. | |
| The gap extension penalty parsed from a Blast report. | |
| The gap open penalty parsed from a Blast report. | |
| The kappa value parsed from a Blast report. | |
| The lambda value parsed from a Blast report. | |
| Get next Blast report from a file containing multiple Blast reports. (BlastReport) | |
| The name (identifier) of the query in a Blast report. (BlastReport) | |
| The total number of hits in a Blast report. | |
| The number of HSPs for an entire Blast report or for one Blast hit. | |
| Reference to the name (identifier) of the query in a Blast report. (BlastReport) |
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de