Class Specialization
ChainedSeed
Describes a seed with start and end position2 and diagonal upper and lower bounds. Additionaly diagonal segments
between start and end position2 are stored.
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ChainedSeed | |||||||
Parameters
The type of number that schuld be used. Must have negative numbers (e.g. int/long). |
Specialization of
Member Functions
| Constructor |
Functions
| Adds a seed to an existing set. (Seed) | |
| Adds diagonal to the seed. | |
| Calculates a banded alignment around a Seed. (Seed) | |
| Dimension of a seed. (Seed) | |
| Returns the diagonal of the end point. (Seed) | |
| Extends a seed. (Seed) | |
| Extends a seed and increases the score. (Seed) | |
| Constructs a alignment from a ChainedSeed. | |
| Returns the most left diagonal of the seed (maximum diagonal value). (Seed) | |
| Returns the first position of the seed in the query. (Seed) | |
| Returns the first position of the seed in the database. (Seed) | |
| The begin position of segment in a seed. (Seed) | |
| Returns the most right diagonal of the seed (minimum diagonal value). (Seed) | |
| Returns the last position of the seed in the query. (Seed) | |
| Returns the last position of the seed in the database. (Seed) | |
| The end position of segment in a seed. (Seed) | |
| Calculates the score of a seed. | |
| Sets a new value for the most left diagonal. (Seed) | |
| Updates the start point of the seed. (Seed) | |
| Updates the start point of the seed. (Seed) | |
| Sets begin position of segment in a seed. (Seed) | |
| Sets a new value for the most right diagonal. (Seed) | |
| Updates the end point of the seed. (Seed) | |
| Updates the end point of the seed. (Seed) | |
| Sets end position of segment in a seed. (Seed) | |
| Returns the diagonal of the start point. (Seed) |
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