H/Lfold.h File Reference

Predicting local MFE structures of large sequences. More...

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Functions
float	Lfold (const char *string, char *structure, int maxdist)
	The local analog to fold().
float	aliLfold (const char **strings, char *structure, int maxdist)
float	Lfoldz (const char *string, char *structure, int maxdist, int zsc, double min_z)

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Detailed Description

Predicting local MFE structures of large sequences.

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Function Documentation

float Lfold	(	const char *	string,
		char *	structure,
		int	maxdist
	)

The local analog to fold().

Computes the minimum free energy structure including only base pairs with a span smaller than 'maxdist'

Parameters:

	string
	structure
	maxdist

float aliLfold	(	const char **	strings,
		char *	structure,
		int	maxdist
	)

Parameters:

	strings
	structure
	maxdist

Returns:

float Lfoldz	(	const char *	string,
		char *	structure,
		int	maxdist,
		int	zsc,
		double	min_z
	)

Parameters:

	string
	structure
	maxdist
	zsc
	min_z