/mount/gensoft2/src/ViennaRNA/ViennaRNA-2.1.1/H/findpath.h File Reference

Compute direct refolding paths between two secondary structures. More...

Include dependency graph for findpath.h:

Go to the source code of this file.

Functions
int	find_saddle (const char *seq, const char *struc1, const char *struc2, int max)
	Find energy of a saddle point between 2 structures (serch only direct path).
path_t *	get_path (const char *seq, const char *s1, const char *s2, int maxkeep)
	Find refolding path between 2 structures (serch only direct path).
void	free_path (path_t *path)
	Free memory allocated by get_path() function.

---

Detailed Description

Compute direct refolding paths between two secondary structures.

---

Function Documentation

int find_saddle	(	const char *	seq,
		const char *	struc1,
		const char *	struc2,
		int	max
	)

Find energy of a saddle point between 2 structures (serch only direct path).

Parameters:

	seq	RNA sequence
	struc1	A pointer to the character array where the first secondary structure in dot-bracket notation will be written to
	struc2	A pointer to the character array where the second secondary structure in dot-bracket notation will be written to
	max	integer how many strutures are being kept during the search

Returns:

the saddle energy in 10cal/mol

path_t* get_path	(	const char *	seq,
		const char *	s1,
		const char *	s2,
		int	maxkeep
	)

Find refolding path between 2 structures (serch only direct path).

Parameters:

	seq	RNA sequence
	s1	A pointer to the character array where the first secondary structure in dot-bracket notation will be written to
	s2	A pointer to the character array where the second secondary structure in dot-bracket notation will be written to
	maxkeep	integer how many strutures are being kept during the search

Returns:

direct refolding path between two structures

void free_path

(

path_t *

path

)

Free memory allocated by get_path() function.

Parameters:

path

pointer to memory to be freed