Predicting Locally stable structures of large sequences
[RNA Secondary Structure Folding]

Collaboration diagram for Predicting Locally stable structures of large sequences:

Modules
	Local MFE structure Prediction and Z-scores
	Partition functions for locally stable secondary structures
	Local MFE consensus structures for Sequence Alignments

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Detailed Description

Local structures can be predicted by a modified version of the fold() algorithm that restricts the span of all base pairs.