Local MFE structure Prediction and Z-scores
[Predicting Locally stable structures of large sequences, Calculating Minimum Free Energy (MFE) Structures]

Collaboration diagram for Local MFE structure Prediction and Z-scores:

Functions
float	Lfold (const char *string, char *structure, int maxdist)
	The local analog to fold().
float	Lfoldz (const char *string, char *structure, int maxdist, int zsc, double min_z)

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Function Documentation

float Lfold	(	const char *	string,
		char *	structure,
		int	maxdist
	)

The local analog to fold().

Computes the minimum free energy structure including only base pairs with a span smaller than 'maxdist'

Parameters:

	string
	structure
	maxdist

float Lfoldz	(	const char *	string,
		char *	structure,
		int	maxdist,
		int	zsc,
		double	min_z
	)

Parameters:

	string
	structure
	maxdist
	zsc
	min_z