edu.msu.cme.rdp.classifier.rrnaclassifier
Class ClassificationResult

java.lang.Object
  edu.msu.cme.rdp.classifier.rrnaclassifier.ClassificationResult

public class ClassificationResult
extends java.lang.Object

This class holds the classification results for a query sequence.

Field Summary

(package private) java.util.List	assignments
(package private) HierarchyVersion	hVersion
(package private) Sequence	pSeq

Constructor Summary

ClassificationResult(Sequence p, java.util.List a, HierarchyVersion version)
Creates a new instance of ClassificationResult.

Method Summary

java.util.List	getAssignments() Returns a list of RankAssignments.
HierarchyVersion	getHierarchyTrainsetNo() Returns the version of the taxonomy hierarchy from of the training file.
Sequence	getSequence() Returns the query sequence
int	getTrainsetNo() Returns the training set number of the taxonomy hierarchy from of the training file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

pSeq

Sequence pSeq

assignments

java.util.List assignments

hVersion

HierarchyVersion hVersion

Constructor Detail

ClassificationResult

ClassificationResult(Sequence p,
                     java.util.List a,
                     HierarchyVersion version)

Creates a new instance of ClassificationResult. This class holds the classification results for a query sequence.

Method Detail

getSequence

public Sequence getSequence()

Returns the query sequence

getAssignments

public java.util.List getAssignments()

Returns a list of RankAssignments. The assignments are returned in the order of taxonomic ranks, from the highest to the lowest.

getTrainsetNo

public int getTrainsetNo()

Returns the training set number of the taxonomy hierarchy from of the training file.

getHierarchyTrainsetNo

public HierarchyVersion getHierarchyTrainsetNo()

Returns the version of the taxonomy hierarchy from of the training file.