edu.msu.cme.rdp.classifier.rrnaclassifier
Class GenusWordProbFileParser

java.lang.Object
  edu.msu.cme.rdp.classifier.rrnaclassifier.GenusWordProbFileParser

 class GenusWordProbFileParser
extends java.lang.Object

A parser to parse a reader containing a list of the indices of genus nodes and the conditional probabilities that genus nodes contains the words.

Constructor Summary

GenusWordProbFileParser()
Creates a new instance of GenusWordProbFileParser

Method Summary

(package private) HierarchyVersion

createGenusWordProbList(java.io.Reader r, java.util.List aList, HierarchyVersion version) Reads a file and saves GenusWordConditionalProb objects in a list.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenusWordProbFileParser

GenusWordProbFileParser()

Creates a new instance of GenusWordProbFileParser

Method Detail

createGenusWordProbList

HierarchyVersion createGenusWordProbList(java.io.Reader r,
                                         java.util.List aList,
                                         HierarchyVersion version)
                                   throws java.io.IOException,
                                          TrainingDataException

Reads a file and saves GenusWordConditionalProb objects in a list. Returns the version information for validation purpose. The input file format: integer follows by a tab and float each line. The first value indicates the index of a genus node, the second value indicates the conditional probability that genus node contains the word.

Throws:

java.io.IOException

TrainingDataException