edu.msu.cme.rdp.classifier.train
Class ParsedRawSequence

java.lang.Object
  edu.msu.cme.rdp.classifier.train.ParsedRawSequence

public class ParsedRawSequence
extends java.lang.Object

A ParsedRawSequence holds the data for a raw sequence.

Field Summary

(package private) java.util.List	ancestors
(package private) java.lang.String	name
(package private) java.lang.String	sequence

Constructor Summary

ParsedRawSequence(java.lang.String n, java.util.List al, java.lang.String seq)
Creates new ParsedRawSequence.

Method Summary

java.util.List	getAncestors() Returns the list of the ancestor taxa, with the highest ranked taxon first.
java.lang.String	getName() Returns the name of the sequence.
java.lang.String	getSequence() Returns the sequence string.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

name

java.lang.String name

ancestors

java.util.List ancestors

sequence

java.lang.String sequence

Constructor Detail

ParsedRawSequence

public ParsedRawSequence(java.lang.String n,
                         java.util.List al,
                         java.lang.String seq)

Creates new ParsedRawSequence.

Method Detail

getName

public java.lang.String getName()

Returns the name of the sequence.

getSequence

public java.lang.String getSequence()

Returns the sequence string.

getAncestors

public java.util.List getAncestors()

Returns the list of the ancestor taxa, with the highest ranked taxon first.