Package edu.msu.cme.rdp.classifier.train

Provides classes for creating the training files from the raw training data.

See:
Description

Class Summary

ClassifierTraineeMaker	A command line class to create training information from the raw data.
GoodWordIterator	A GoodWordIterator creates a list of valid words from the input string.
GoodWordIteratorTest	A test class for GoodWordIterator.
ParsedRawSequence	A ParsedRawSequence holds the data for a raw sequence.
RawGenusWordConditionalProb	A RawGenusWordConditionalProb contains the index of the genus node and the conditional probability of the node contains the word.
RawHierarchyTree	A RawHierarchyTree holds the raw taxon and sequences information.
RawHierarchyTreeTest	A test class for RawHierarchyTree.
RawSequenceParser	A parser to parse a reader containing the raw sequences.
RawSequenceParserTest	A test class for RawSequenceParser.
Taxonomy	A Taxonomy holds the raw taxon information.
TrainSuite	A test suite for package edu.msu.cme.rdp.classifier.train.
TreeFactory	A TreeFactory reads the raw taxonomic information and creates the RawHierarchyTree nodes.
TreeFactoryTest	A test class for TreeFactory.

Package edu.msu.cme.rdp.classifier.train Description

Provides classes for creating the training files from the raw training data.

These classes are capable of parsing raw sequences and taxonomy and generating training files. This package contains three main groups of classes:

• Classes for raw sequence parsing.
• Classes for raw taxonomy parsing.
• Classes for training information creation.