edu.msu.cme.rdp.classifier.train
Class Taxonomy

java.lang.Object
  edu.msu.cme.rdp.classifier.train.Taxonomy

public class Taxonomy
extends java.lang.Object

A Taxonomy holds the raw taxon information.

Field Summary

(package private) int	depth
(package private) java.lang.String	hierLevel
(package private) int	parentID
(package private) int	taxID
(package private) java.lang.String	taxName

Constructor Summary

Taxonomy(int id, java.lang.String name, int pid, int d, java.lang.String level)
Creates a new instance of Taxonomy

Method Summary

void	changeRank(java.lang.String s)
int	getDepth() Returns the depth of the current taxon from root taxon.
java.lang.String	getHierLevel() Returns the hierarchy rank level.
int	getParentID() Returns the taxID of the parent taxon.
int	getTaxID() Returns the taxID.
java.lang.String	getTaxName() Returns the taxon name.
void	setDepth(int d)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

taxID

int taxID

taxName

java.lang.String taxName

parentID

int parentID

depth

int depth

hierLevel

java.lang.String hierLevel

Constructor Detail

Taxonomy

public Taxonomy(int id,
                java.lang.String name,
                int pid,
                int d,
                java.lang.String level)

Creates a new instance of Taxonomy

Method Detail

getTaxID

public int getTaxID()

Returns the taxID.

getTaxName

public java.lang.String getTaxName()

Returns the taxon name.

getParentID

public int getParentID()

Returns the taxID of the parent taxon.

getDepth

public int getDepth()

Returns the depth of the current taxon from root taxon.

getHierLevel

public java.lang.String getHierLevel()

Returns the hierarchy rank level.

setDepth

public void setDepth(int d)

changeRank

public void changeRank(java.lang.String s)